Rapid economic development and increasing population in China have exerted tremendous pressures on the coastal ecosystems. In addition to land-based pollutants and reclamation, fast expansion of large-scale intensive mariculture activities has also brought about additional effects. So far, the ecological impact of rapid mariculture development and its large-scale operations has not drawn enough attention. In this paper, the rapid development of mariculture in China is reviewed, China's effort in the application of ecological mariculture is examined, and the vulnerability of marine ecosystem to mariculture impact is evaluated through a number of examples. Removal or reduced large and forage fish, due to both habitat loss to reclamation/mariculture and overfishing for food or fishmeal, may have far-reaching effects on the coastal and shelf ecosystems in the long run. Large-scale intensive mariculture operations carry with them undesirable biological and biochemical characteristics, which may have consequences on natural ecosystems beyond normally perceived spatial and temporal boundaries. As our understanding of possible impacts of large-scale intensive mariculture is lagging far behind its development, much research is urgently needed.