We evaluated the potential of three seaweed species (Ulva pertusa, Saccharina japonica, Gracilariopsis chorda) as biofilters for effluents from black rockfish (Sebastes schlegeli) tanks. The experiments consisted of a fish monoculture system and a fish-seaweed integrated system under identical physical conditions. All species efficiently removed NH 4 + , NO 3 – + NO 2 – , and PO 4 3– from the fish tank effluents. Of the three species evaluated, U. pertusa showed the highest biofil-tering efficiency for NH 4 + (>80%). In contrast to U. pertusa and G. chorda, S. japonica showed a relatively higher prefer-ence for NO 3 – + NO 2 – than for NH 4 + . These results suggest that seaweeds may select nitrogen sources fitting their storage capacity. Therefore, standard fish farm effluents should establish a total nitrogen concentration that includes both NO 3 – and NH 4 + , and the selection of a biofilter seaweed species should be made with consideration of the N forms expelled in effluent. The biofiltering efficiency for PO 4 3– was highest in G. chorda (38.1%) and lowest in S. japonica (20.2%). In all species, tissue N and P contents rapidly increased over the initial values. The data for tissue N and P contents, and C : N and N : P ratios, indicate that neither N nor P was limiting. This suggests that the three species serve as biofilters by stor-ing large amounts of nutrients. These results provide valuable information for selecting optimal seaweed species in fish-seaweed integrated systems and allow land-based integrated aquaculture system operators to understand the behavior of integrated cultures sufficiently for the results herein to be extrapolated to larger-scale cultures.